A little more organic chemistry.
Many biological processes produce only one form of an isomeric compound. Laboratory processes (on up to industrial scale) tend to produce a mixture of the isomers, so the result differs from the natural product. A good example is vitamin E. The natural for is d-alpha tocopherol while the synthetic form also has l-alpha tocopherol. Vitamin pills using the synthetic form will show dl-alpha tocopherol as the active ingredient.
Biochemical activity of two isomers can be quite different, which is at the root of problems with trans fats.
There is an additional issue with partial hydrogenation in that the degree of hydrogenation can vary a lot. Two batches of partially hydrogenated soybean oil could have substantially different trans fat counts, for example, since partial covers anything from very slight to almost complete. Cis fats in the original oil could remain. Of course, if hydrogenation is complete, there will be no double bonds in the resulting fully saturated fat and therefore no cis or trans fat. Degree of hydrogenation, the mixture of fatty acids in the source oils and amount of oil per serving all affect the amount of trans fat in a serving even if serving size hasn't been chosen in a tricky manner. There are lots of ways to manipulate the variables to have partially hydrogenated oil and still have less than half a gram of trans fat per serving.