Although it is fashionable to point every visitor to the GNR list without comment, in this case Atlanta had some pretty specific questions. I'm not sure how helpful it is to just tell him to read the list.
Although Pequod's is not on the GNR list, it has a very loyal following. I happen to love Pequod's deep dish. If you want thin or stuffed pizza, I'd probably steer to you different places. (I used to love Pequod's thin pizza, but it hasn't been that exciting the last few times I've tried it.) My other favorite is Malnatti's, which has multiple locations around the city. I've been disappointed the last few times I've had Gino's East. Uno's and Due's are great, but not worth the very, very long waits at the downtown locations.
The GNR list has these pizza recommendations:
Burt's Place-- A pizza master who started several of the area's best-known spots now holds court and serves great deep-dish in this homey little spot hidden on a side street in Morton Grove.
Coalfire Pizza Oven-- A genuine coal-fired oven is responsible for the tasty char on Italian and New Haven-style thin crust pizzas at this Grand Avenue newcomer.
Marie's Pizza-- Ageless bar and restaurant serving great thin crust pizza on the northwest side. Eat it hot and fresh!
Spacca Napoli-- Owner Jonathan Goldsmith studied pizza-making in Italy and imported a massive wood-burning oven (and a pizza chef) to make the best and most authentic Neapolitan-style pizzas Chicago has ever seen.
Stop 50 Woodfired Pizza-- Authentic Neapolitan-style pizza, topped with homegrown herbs, in the Chicago vacation-home community of Michiana Shores, Indiana.
Vito & Nick's-- A south side institution and paragon of the Chicago "cracker crust" pizza style.
Although I haven't tried all of them, it is safe to say that all are excellent. Some are rather far from downtown and Wrigleyville, and (as far as I know) only Burt's does deep dish.
I had one meal at Francesca's and was not impressed. If you want old school Italian (i.e. "Italian-American"), Sabatino's is a good bet. If you want more modern Italian that emphasizes fresh, local ingredients, try one of my favorite places (that happens to be about a 20 minute walk from Wrigley),
Terragusto.
I don't go to Steak houses much, but I really enjoyed my meal at David Burke's Primehouse.